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Distinctive structure of endophytic microbial communities in two species of wild and cultivated rice

文献类型： 外文期刊

作者： Lei, Lingyun 1 ; Li, Xingyi 1 ; Xiong, Zixuan 1 ; Li, Jinlu 1 ; Liu, Li 1 ; Chen, Ling 1 ; Zhong, Qiaofang 1 ; Jiang, Hui 1 ; Cheng, Zaiquan 1 ; Xiao, Suqin 1 ;

作者机构： 1.Yunnan Acad Agr Sci, Biotechnol & Germplasm Resources Inst, Kunming, Peoples R China

2.Zhejiang Univ, Inst Biotechnol, Minist Agr, Key Lab Mol Biol Crop Pathogens & Insects, Hangzhou, Peoples R China

关键词： Oryza officinalis; Oryza meyeriana; endophytes; community structure and function; difference analysis; co-occurrence network

期刊名称：MICROBIOLOGY SPECTRUM （ 影响因子：3.8； 五年影响因子：4.1 ）

ISSN：

年卷期： 2025 年 13 卷 9 期

页码：

收录情况： SCI

摘要： Endophytic microbial communities play an important role in plant development, nutrient acquisition, and oxidative stress tolerance. Oryza officinalis and Oryza meyeriana are unique wild rice varieties in China with many high-quality resistance genes, rich endophyte diversity, and potential resources for sustainable agriculture. In the present study, the endophytic microbial community structures of O. officinalis, O. meyeriana, and cultivated rice were compared using metagenomic sequencing. Dechloromonas, Salmonella, Klebsiella, and Listeria were the core microbial groups in wild and cultivated rice. The relative abundances of Ligilactobacillus, Escherichia, and Bradyrhizobium in O. meyeriana were higher than those in cultivated rice. The relative abundances of Listeria, Acinetobacter, Escherichia, and Dechloromonas in O. officinalis were also higher. Compared to that of cultivated rice, the microbiota of wild rice had a more complex and stable community network. At the pathway level 2 based on the Kyoto Encyclopedia of Genes and Genomes classification system, the relative abundance of metabolic categories was dominant. Most pathways showed that the O. officinalis relative abundance was higher than those of the other two species. Our study revealed differences in the leaf endophyte community structure and function between wild and cultivated rice in the same habitat, demonstrating the potential of wild rice in recruiting specific microorganisms to improve crop performance and promote safe and sustainable food production.IMPORTANCEUnder the current climate change environment, plant-beneficial endophytes are of great significance for promoting food production. Modern cultivars may have lost many beneficial endophytes compared to their ancestors. However, relatively few studies have been conducted on the community structure and function of modern ancestral crop endophytes. In this study, the composition and function of the microbial communities of two wild rice species were analyzed; the differences between them and cultivated rice were determined; and the patterns of microbial interactions and their core microbiomes were determined. Our findings can aid in the exploration of the beneficial endophytes in wild rice and use them to improve crop stress resistance and sustainability. These results provide relevant insights into the role of endophytes in the mechanism of high-stress resistance in wild rice.

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