您好，欢迎访问云南省农业科学院 机构知识库！

Genetic variation and phylogeography of Psammosilene tunicoides (Caryophyllaceae), a narrowly distributed and endemic species in south-western China

文献类型： 外文期刊

作者： Zhang, Qing-Ying 1 ; Zhao, Yu-Juan 1 ; Gong, Xun 1 ;

作者机构： 1.Chinese Acad Sci, Kunming Inst Bot, Key Lab Biodivers & Biogeog, Kunming 650204, Peoples R China

2.Yunnan Acad Agr Sci, Ind Crops Res Inst, Kunming 650205, Peoples R China

关键词： nuclear DNA: nDNA;chloroplast DNA: cpDNA;trnQ-5'rps16 region;rpL16 region;genetic variation;Genbank sequence data;seed dispersal;population structure;phylogeography;population differentiation;geographic isolation;haplotype diversity;population expansion;population history;allele variation

期刊名称：AUSTRALIAN JOURNAL OF BOTANY （ 影响因子：1.237； 五年影响因子：1.394 ）

ISSN：

年卷期：

页码：

收录情况： SCI

摘要： Psammosilene tunicoides is a narrowly distributed and endemic species in south-western China. An investigation of sequence variation at two chloroplast DNA (cpDNA) regions (rpL16, trnQ-5'rps16) and one nuclear DNA (nDNA) locus (GPA1) were carried out to survey the population structure and population history of the species. Among the 22 populations across its geographical range, nine chloroplast haplotypes and 17 nuclear alleles were identified. Both cpDNA and nDNA consistently revealed high levels of population differentiation (G(ST) = 0.604 and 0.540, respectively), suggesting a distinct phylogeographic structure (N-ST > G(ST), P < 0.01). This high genetic differentiation might be a combined effect of breeding system, limited pollen and seed dispersal and geographic isolation of populations. The level of haplotype diversities (cpDNA, h(T) = 0.575; nDNA, h(T) = 0.724) were high, but the nucleotide diversities (cpDNA, pi = 0.00099; nDNA, pi = 0.00105) were low. These results together with the star-like phylogenetic pattern and neutrality tests indicate that P. tunicoides has experienced a population expansion event in its evolution. Limited genetic exchange after population expansion was supported by the pronounced genetic differentiation among populations as well as evidence for 'isolation-by-distance' revealed by cpDNA. Due to high population subdivision and complex landscape, as many populations as possible should be considered for genetic conservation.

  • 相关文献

[1]Phylogeography of Rosa soulieana (Rosaceae) in the Hengduan Mountains: refugia and 'melting' pots in the Quaternary climate oscillations. Jian, Hong-Ying,Sun, Hang,Jian, Hong-Ying,Tang, Kai-Xue,Jian, Hong-Ying.

[2]Genetic structure and phylogeography of Pyrus pashia L. (Rosaceae) in Yunnan Province, China, revealed by chloroplast DNA analyses. Liu, Jing,Sun, Ping,Zheng, Xiaoyan,Hu, Chunyun,Teng, Yuanwen,Zheng, Xiaoyan,Potter, Daniel,Li, Kunming. 2013

[3]Analysis of genome expression in the response of Oryza granulata to Xanthomonas oryzae pv oryzae. Lv, Guang-Lei,Wu, Wen-Ting,Cheng, Zai-Quan,Luo, Yu,Chen, Shan-Na.

[4]Differential Gene Expression Analysis of Yunnan Red Pear, Pyrus Pyrifolia, During Fruit Skin Coloration. Zhang, Xiaodong,Yi, Qiong,Chen, Limei,Li, Kunzhi,Shu, Qun,Su, Jun,Allan, Andrew C..

[5]Analysis of differentially expressed genes in Oryza meyeriana in response to infection by Xanthomonas oryzae pv. oryzae. Cheng, Z.,Tang, K.,Yan, H.,Fu, J.,Ying, F.,Huang, X.,Tang, K.,Huang, X..

[6]Genetic variation and phylogenetic relationship analysis of Jatropha curcas L. inferred from nrDNA ITS sequences. Guo, Guo-Ye,Chen, Fang,Shi, Xiao-Dong,Tian, Yin-Shuai,Guo, Guo-Ye,Yu, Mao-Qun,Han, Xue-Qin,Yuan, Li-Chun,Zhang, Ying.

[7]Genetic Diversity and Population Structure of Seedling Populations of Pyrus pashia. Zong, Yu,Sun, Ping,Liu, Jing,Yue, Xiaoyan,Teng, Yuanwen,Li, Kunming.

[8]A genomic perspective on the important genetic mechanisms of upland adaptation of rice. Lyu, Jun,Gou, Zhiheng,Wang, Wen,Li, Baoye,Zhang, Shilai,Zhang, Jing,Tao, Dayun,Huang, Wangqi,Hu, Fengyi,He, Weiming,Meng, Liyun,Li, Xin. 2014

[9]Genetic diversity and population structure in Elephantopus scaber (Asteraceae) from South China as revealed by ISSR markers. Wang, L.,Liu, J.,Zhang, W.,Wang, Q.,Zhao, X.,Liu, N.,Zhong, Y.. 2006

[10]Genetic diversity and population structure of Lamiophlomis rotata (Lamiaceae), an endemic species of Qinghai-Tibet Plateau. Liu, Jimei,Wang, Li,Geng, Yupeng,Wang, Qingbiao,Luo, Lijun,Zhong, Yang. 2006

[11]Genetic structure of populations of sugarcane streak mosaic virus in China: Comparison with the populations in India. Li, Shifang,He, Zhen,He, Zhen,Yasaka, Ryosuke,Ohshima, Kazusato,Yasaka, Ryosuke,Ohshima, Kazusato,Li, Wenfeng.

[12]Population structure of Phytophthora infestans in China - geographic clusters and presence of the EU genotype Blue_13. Huang, S. W.,van der Lee, T.,Kessel, G.,Zhu, J. H.,Jin, G. H.,Lan, C. Z.,Zhu, S. X.,Jacobsen, E.,Zhang, R. F.,Liu, B. W.,Zhao, Z. J..

作者其他论文 更多>>
置顶
购物车
反馈

© 京ICP备09089781号-29 主办单位：云南省农业科学院

学术资源： 中国农业科学院 农业专业知识服务系统 农科联盟资源共建共享平台 中国农业科技文献与信息服务平台 中国农业期刊集成服务平台