Genome-wide characterization and sequence polymorphism analyses of cysteine-rich poly comb-like protein in Glycine max
文献类型： 外文期刊
作者： Nisar, Tayyaba 1 ; Tahir, Muhammad Hammad Nadeem 1 ; Iqbal, Shahid 1 ; Sajjad, Muhammad 2 ; Nadeem, Muhammad Azhar 3 ; Qanmber, Ghulam 4 ; Baig, Ayesha 5 ; Khan, Zulqurnain 1 ; Zhao, Zhengyun 6 ; Geng, Zhide 6 ; Ur Rehman, Shoaib 1 ;
作者机构： 1.Muhammad Nawaz Shareef MNS Univ Agr, Inst Plant Breeding & Biotechnol, Multan, Pakistan
2.Technol Sustainable Dev South COMSATS Univ Islamab, Dept Biosci, Commiss Sci, Islamabad, Pakistan
3.Sivas Univ Sci & Technol, Fac Agr Sci & Technol, Sivas, Turkey
4.Cotton Res Inst Chinese Acad Agr Sci, State Key Lab Cotton Biol, Anyang, Peoples R China
5.Univ Islamabad, Islamabad, Pakistan
6.Yunnan Acad Agr Sci, Inst Food Crops, Kunming, Peoples R China
关键词： soybean; phylogenetic analyses; kompetitive allele specific PCR; association analyses; drought; GmCPP
期刊名称：FRONTIERS IN PLANT SCIENCE （ 影响因子：6.627； 五年影响因子：7.255 ）
ISSN： 1664-462X
年卷期： 2022 年 13 卷
页码：
收录情况： SCI
摘要： Cysteine-rich poly comb-like protein (CPP) is a member of cysteine-rich transcription factors that regulates plant growth and development. In the present work, we characterized twelve CPP transcription factors encoding genes in soybean (Glycine max). Phylogenetic analyses classified CPP genes into six clades. Sequence logos analyses between G. max and G. soja amino acid residues exhibited high conservation. The presence of growth and stress-related cis-acting elements in the upstream regions of GmCPPs highlight their role in plant development and tolerance against abiotic stress. Ka/Ks levels showed that GmCPPs experienced limited selection pressure with limited functional divergence arising from segmental or whole genome duplication events. By using the PAN-genome of soybean, a single nucleotide polymorphism was identified in GmCPP-6. To perform high throughput genotyping, a kompetitive allele-specific PCR (KASP) marker was developed. Association analyses indicated that GmCPP-6-T allele of GmCPP-6 (in exon region) was associated with higher thousand seed weight under both water regimes (well-water and water-limited). Taken together, these results provide vital information to further decipher the biological functions of CPP genes in soybean molecular breeding.
- 相关文献
作者其他论文 更多>>
-
Genome-Wide Characterization and Sequence Polymorphism Analyses of Glycine max Fibrillin (FBN) Revealed Its Role in Response to Drought Condition
作者：Zafer, Muhammad Zeshan;Khan, Zulqurnain;Ur Rehman, Shoaib;Zafer, Muhammad Zeshan;Tahir, Muhammad Hammad Nadeem;Khan, Zulqurnain;Bakhtavar, Muhammad Amir;Waheed, Ummara;Ur Rehman, Shoaib;Sajjad, Muhammad;Gao, Xiangkuo;Geng, Zhide;Siddique, Maria
关键词：Glycine max; fibrillin (FBN); genome-wide identification; marker-assisted breeding; CAPS; drought
-
Characterization of Histone H3 Gene Family Reveals That GmHH3-3 is Associated With Higher Seed Weight in Glycine max
作者：Fatima, Chahat;Tahir, Muhammad Hammad Nadeem;Khan, Zulqurnain;Ur Rehman, Shoaib;Ikram, Rao Muhammad;Sajjad, Muhammad;Qanmber, Ghulam;Darwish, Essam;Geng, Zhide;Xiangkuo, Gao
关键词：histone H3; marker-assisted breeding; KASP; drought; Glycine max
-
Nutraceutical profiling of elite onion germplasm and breeding hybrids with improved nutraceutical quality
作者：Tabussam, Najma;Rana, Rashid Mehmood;Shah, Muhammad Kausar Nawaz;Ahmad, Muhammad Sheeraz;Sajjad, Muhammad;Lu, Yongqiang
关键词：
-
Potential Targets for CRISPR/Cas Knockdowns to Enhance Genetic Resistance Against Some Diseases in Wheat (Triticum aestivum L.)
作者：Taj, Mehwish;Sajjad, Muhammad;Yasmeen, Arooj;Li, Mingju;He, Chi;Mubarik, Muhammad Salman;Kaniganti, Sirisha
关键词：S genes; crispr; cas; stripe rust; leaf rust; powdery mildew; biotic stress; wheat; genetic resources
-
Characterization of Vascular plant One-Zinc finger (VOZ) in soybean (Glycine max and Glycine soja) and their expression analyses under drought condition
作者：Rehman, Shoaib Ur;Tahir, Muhammad Hammad Nadeem;Ahmad, Furqan;Ali, Zulfiqar;Shees, Muhammad;Usman, Muhammad;Qanmber, Ghulam;Irshad, Ahsan;Fiaz, Sajid;Sajjad, Muhammad;Geng, Zhide
关键词：
-
Determination of Effective Method of NPK Fertilization in Pea (Pisum sativum L.) Cultivars Grown in Pakistan
作者：Sarfraz, Muniza;Hussain, Khalid;Nawaz, Khalid;Parveen, Sana;Yasin, Ghulam;Geng, Zhide;Sajjad, Muhammad
关键词：Antioxidants; Growth; NPK; Pea; Yield
-
Genome-Wide Association Mapping through 90K SNP Array for Quality and Yield Attributes in Bread Wheat against Water-Deficit Conditions
作者：Ahmed, Hafiz Ghulam Muhu-Din;Sajjad, Muhammad;Akhtar, Malik Nadeem;Zeng, Yawen;Iqbal, Muhammad;Khan, Sultan Habibullah;Ullah, Aziz
关键词：yield; quality; wheat; MTAs; GWAS; SNP; drought; MAS; QTL; population structure
