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Genome-Wide Bisulphite Sequencing Uncovered the Contribution of DNA Methylation to Rice Short-Term Drought Memory Formation

文献类型： 外文期刊

作者： Kou, Shuyan 1 ; Gu, Qiongyao 1 ; Duan, Liu 2 ; Liu, Gaojing 3 ; Yuan, Pingrong 1 ; Li, Huahui 1 ; Wu, Zhigang 1 ; Liu, We 1 ;

作者机构： 1.Yunnan Acad Agr Sci, Inst Food Crop, Kunming 650205, Yunnan, Peoples R China

2.Hubei Univ, Hubei Collaborat Innovat Ctr Green Transformat Bi, State Key Lab Biocatalysis & Enzyme Engn, Sch Life Sci,Hubei Key Lab Ind Biotechnol, Wuhan, Hubei, Peoples R China

3.Berry Oncol Corp, Fuzhou 350200, Peoples R China

关键词： Oryza sativa; Drought stress; DNA methylation; Short-term epigenetic memory; Stress memory

期刊名称：JOURNAL OF PLANT GROWTH REGULATION （ 影响因子：4.169； 五年影响因子：4.038 ）

ISSN： 0721-7595

年卷期：

页码：

收录情况： SCI

摘要： Rice is the important crop for more than half of the world population. However, drought can have a devastating impact on rice growth and reduce yield drastically. Understanding the response of rice to drought stress is especially important for crop breeding. Previously we found that rice enhanced its tolerance to drought stresses via stress memory mechanisms. Numerous memory genes were identified to play important roles in the process. DNA methylation was reported to mediate tolerance via regulating gene expression and enhances the survival rate of rice encountering drought stress. However, how DNA methylation involved in stress memory is still not clear. In this study, genome-wide bisulphite sequencing at a single base resolution methylome profiling level was performed and analyzed in rice cultivar under recurrent drought stresses and recovery treatments. We found that rice drought stress memory-related differentially methylated regions (DMRs) showed dynamic and distinct patterns. The drought-memory DMRs may regulate Transposable elements and gene expression to cope with short-term repeated drought stresses. Our findings of drought-memory DMRs can explain mechanisms of rice drought stress memory in a new perspective on global methylome details. Using epigenetic markers to breed drought-resistant rice would become a feasible way in the future research.

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