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Genome-Wide Association Mapping for Stomata and Yield Indices in Bread Wheat under Water Limited Conditions

文献类型： 外文期刊

作者： Ahmed, Hafiz Ghulam Muhu-Din 1 ; Iqbal, Muhammad Nouman 2 ; Iqbal, Muhammad Arslan 3 ; Zeng, Yawen 4 ; Ullah, Az 1 ;

作者机构： 1.Islamia Univ Bahawalpur, Fac Agr & Environm, Dept Plant Breeding & Genet, Bahawalpur 63100, Pakistan

2.Rural Hlth Ctr Sardar Pur Kabirwala, Khanewal 58150, Pakistan

3.DHQ Hosp Muzaffargarh, Muzaffargarh 34200, Pakistan

4.Yunnan Acad Agr Sci, Biotechnol & Germplasm Resources Inst, Kunming 650205, Yunnan, Peoples R China

5.Univ Sargodha, Fac Agr, Dept Plant Breeding & Genet, Sargodha 40100, Pakistan

6.Nucl Inst Agr & Biol NIAB, Faisalabad 38000, Pakistan

7.Soil & Water Testing Lab, Khanewal 58150, Pakistan

8.Univ Agr Faisalabad, Dept Agron, Faisalabad 38040, Pakistan

关键词： genome-wide association study; marker-trait association; water shortage; SNPs; yield

期刊名称：AGRONOMY-BASEL （ 影响因子：3.417； 五年影响因子：3.64 ）

ISSN：

年卷期： 2021 年 11 卷 8 期

页码：

收录情况： SCI

摘要： Genome-wide association study (GWAS) was performed for stomata- and yield-related attributes with high-density Illumina 90 K Infinium SNP (single nucleotide polymorphism) array in bread wheat to determine genetic potential of germplasm for scarce water resources with sustainable yield potential. Major yield and stomata attributes were phenotyped on a panel of Pakistani and foreign accessions grown in non-stressed and water shortage environments during two seasons. Highly significant variations were shown among accessions in both conditions for examined characteristics. Water shortage conditions reduced the overall wheat yield and strong positive correlation existed among stomatal frequency, leaf venation and grain yield per plant. Population structure analyses based on 90,000 SNP data classified the accessions into four sub-populations which indicated the presence of genetic variability. Marker-trait association (MTA) analyses revealed that 422 significant SNPs at p <= 10(-3), after crossing the false discovery rate (FDR) <0.05 threshold, were linked with examined attributes. Pleiotropic loci (wsnp_Ex_c8913_14881924 and Tdurum_contig10598_304) were associated with flag leaf area (FLA), stomata size (SS), stomata frequency (SF), leaf venation (LV), number of grain per spike (NGS) and grain yield per plant (GYP), which were located on chromosome 4B and 6B at the positions 173.63cM and 229.64cM, respectively, under water shortage conditions. Pleotropic loci wsnp_Ex_c24167_33416760, wsnp_Ex_c5412_9564046 and Tdurum_contig81797_369 on chromosomes 7A, 2A and 4B at the positions 148.26cM, 261.05cM and 173.63cM, respectively, were significantly linked with stomata and yield indices such as FLA, SS, SF, LV, NGS and GYP under normal and water shortage conditions. The current experiment not only validated several MTAs for studied indices reported in other studies but also discovered novel MTAs significant under water shortage environments. Associated and significant SNPs will be useful in discovering novel genes underpinning water shortage tolerance in bread wheat for producing high-yielding and drought tolerant wheat varieties to fulfill the wheat demand for growing populations.

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